rs48727298 SNP Detail

Summary

• ID
  rs48727298
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTGCTT TCCTATACCA
  CCTAGGATCA TCTGCCCAGA GGTAGCACCA TCCACAACGG GATAAGCCCT TCCACATTAA
  ACACCAAATG AGAAAACGTC TCACAGAGTT GCCTAAAGGC CAATCGAATG GAGGCTTTTT
  CTCAAGGGAG GCTCAAATGG GATACCCTGG CTTGTGTCAA GTTCACAAAA AACTAATCAG
  M
  ACACCCCTTC TATGAGTATT TCATACACAG AAATACAGAC AAACACGCAC GGAAGACATA
  AATTATGTGT GTTATATGTG TGTGTATGTA TAATTTATCT ATATAAGTTG CACACATACA
  TAAATACACA GGAGGCATAC ATATATGTAC ATTCACAGAC GACATGAATA TCAGATAAAA
  TACAAATACT ACATATGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111668	ENSMUSSNP1441481	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48727298					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1196 bp proximal
Rr587740	regulatory region 587740			1642 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1498 bp upstream
Tssr36239	transcription start site region 36239			1350 bp upstream