rs48721470 SNP Detail

Summary

• ID
  rs48721470
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147894216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCTGACC TGGAAGGTGA CAGGACCAGC TGCTCAATGT
  CCTAGGAGGC CAGCACAACA ACTGCTGCTT AAGAAAGTTT TCAGGTTCCG CAAATACTAG
  K
  CGCTAGTCTC CCTCCATAAC TTCCTGATCA CGAGGCAGCT GAGATGCAAG AAGAAAGATG
  AAACCGCGGA ACTTCCCTTC ATGCTGCCTA GCCCCGCCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147982797	ENSMUSSNP581390	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48721470					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147894216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20707	predicted gene 20707			within coordinates
Rr377386	regulatory region 377386			within coordinates
Rr398847	regulatory region 398847			1798 bp upstream
Rr604501	regulatory region 604501			947 bp distal
Rr604502	regulatory region 604502			within coordinates
Rr604503	regulatory region 604503			19 bp proximal
Tssr44548	transcription start site region 44548			43 bp downstream
Zfp984	zinc finger protein 984			Intron
				mRNA-UTR