rs48720997 SNP Detail

Summary

• ID
  rs48720997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63805522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACATAG CAAGTAGCTC
  TCGATCGCGC TGCGAAATAG GGATGCAGTC TAAGAAAACA TAGTAACAAC AAGTTATAGC
  ACCCACTAGA AACCGCTGGA GATTTGTACT CTTACCAAAT GCTCCCCTGG GTGCAAACAA
  ATGAAACTTA AAAGACGGGA AGAGGTTTTT CAAGACACAA TTTTAAGTCG TCAACAGACG
  R
  CTTAAGAAAG ACTAGTCTGC AATAATGCGT CTTAAAACAT TCATTTTCTG AACAAGATCA
  TAATGCCAGC AGTAAGCAAC CCACATCTTA AAAAGCAACG TCTCTGTTGA CAGAGAGAAC
  CTTTGCTTCC CTTCACCGGC ATTTAACACA CTAGTTCATT TGGAGAGCAT CAGGTTCTGT
  ACGTTATAAA CAGGTTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416444	NES15918967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48720997					SNP	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416444	NES15918967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63805522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	542 bp proximal
Plch1	phospholipase C, eta 1	Intron
Rr577600	regulatory region 577600	1871 bp distal
Rr577601	regulatory region 577601	614 bp distal
Rr577602	regulatory region 577602	138 bp proximal
Rr577603	regulatory region 577603	1262 bp proximal
Tssr33440	transcription start site region 33440	1295 bp downstream
Tssr33441	transcription start site region 33441	1309 bp downstream
Tssr33442	transcription start site region 33442	1336 bp downstream