rs48717604 SNP Detail

Summary

• ID
  rs48717604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27156350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTGTGA GTCATTTCCA
  AGTACTGTAG GTCAGCTTTG TTGTAAACTG GGGTATGTGT GTGTTTGTGT GTTTACACGT
  GCATGCACGA GTGTACTTAT GCGGGTACAG TACAGGGCCC CCTGATGTGT ATCAGGCAGG
  TGCTTTCTAC TTTTTTCTTG CTAAAGATGG GATCTCTCCT AGCATGGACT TCACCAAGTC
  R
  GCTACACTAG CTGACACCAA ACTCCAGGAG TGCTCCCGAC TCTGCCGCAG CTCCGTAGGT
  TCTAAAGAGA GAACTCACTC AGGTCCTCAC AACAGCTCTA GACCATTCTG TTATTGGTGT
  TGAAGGCAAC GTTCCTTTAA TTTAATGTGA AAAGCACATT TAGAGATATC CTCAGAATTT
  CACTAGAACT CACCTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134702047	ENSMUSSNP7110080	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48717604					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27156350 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	773 bp proximal