rs48712784 SNP Detail

Summary

• ID
  rs48712784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140555600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGTGTGT CCACCAGGCT
  GACACTGAGA GAGAGCAGCC CTGAGAAACT GGCGTCGGGG AAGGCGAGCC CTTCCACGTA
  GAACTGGATG GCCCTCTCCC CAGAATGCCT TTCCACCTCA TAGGAGCTGT GACGGGGCCC
  TAGCACCTGT TTGTAGTTGG AGAGGGATGT CCCACCTAAG GAGAACAGGG TCAGGCCAGT
  K
  TGGGGACAGG GTTGGGGCTG GCAGGACAGG AGGACAGGAA ACCTGTGGCC GGAATCTGGG
  CCGAAGCACC CCTGGGGAGG TCTGCTTCAG TTCTCTTCCA GTGCTACTAT GCAGAAGCTG
  TGTGACCTTG GCTCAATGAC TCAACCTCTC TGAGCCTTAG GTCAAGTGTA TAGCAGACAA
  ATAGAGAAAA GCATCTGACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147714973	ENSMUSSNP3255916	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48712784					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140555600 () rs orientation: forward

Symbol	Name	Function Class
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603561	regulatory region 603561	1876 bp distal
Rr603562	regulatory region 603562	845 bp distal
Tssr44283	transcription start site region 44283	1699 bp upstream