rs48710068 SNP Detail

Summary

• ID
  rs48710068
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTACAGA GATAGGTGGC
  TGCTTTCCCT TTTGTTTGCA CATGGGACCC CTAAGGTTGG GGAACTGTCC CCAGAGGCAC
  CCACCTGATA CCAACAGAGC TAGAGCTTAG CCCAGCCTGG GACCTTGGCA AGCCTGCCTG
  GAAGTGATTT CACTTTCCCT TCCTGCCCCT CCCTCCATAG GAGAGGGAGG CTGCCCCTTT
  S
  TGGAAGTTCT GCTTCGAAGC TGAGCCCCCA ACTAAGCTTA GAAATGACAC AAATGGCAAA
  AGAGCTGGGG AGAAGCGTGC CTGGCCTCTA AGAGATCTAT CAAGACTTCT GCTTCTTCCC
  AGTGGCCCCT TAGAACCACG GATGGTAGCC CCTACCCACA GAAGTCACAG TATGCTGGGT
  AGAGCATAGT CGCTAAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209679	ENSMUSSNP3797617	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48710068					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552933 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	within coordinates
Rr569474	regulatory region 569474	1364 bp proximal