rs48708043 SNP Detail

Summary

• ID
  rs48708043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156575814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC TGAGCGGACT ATGTTAAACA
  Y
  GTATCCTCCT TCCCCAAACA CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145804021	ENSMUSSNP2692156	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48708043					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156575814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	248 bp proximal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	274 bp proximal
Rr421243	regulatory region 421243	913 bp proximal
Rr421244	regulatory region 421244	1662 bp proximal