rs48707092 SNP Detail

Summary

• ID
  rs48707092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41079625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTGAAA ACAAATGTAC
  TGTAATACAT TCACTCTGGC TACAAAAATA AAACACCCCG AACCGAGTTT TCTTTGCAGT
  CTTCAAATCC AGATGGTAGT AAAATTTGAC ATTTCAATTC TGTTTGCGAG ATTCATTTTG
  TTTTTAAATT GGGAAGAGCC ACGGGGCTAA AAATTGTCTG GAGTACTAGG AAAGCCTGGT
  R
  AGGCCTCTTT AGCGATGTTA TTAATAAGGC TGTGGTCTTT GAAAGGGGAT TTGGAGACAG
  CAGATAGAGG CTGTAAACAA GCCTATGGGT ATGAATAAGG ACCCTGCTTC CTCAGTTCTC
  TCCTACTGTG ACAGGGACAG TGCAAGGAAG AGGATCAGGA CAAAAAGGGG CTGTTTTGGT
  GGCTGAATTA AGCCAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399487	NES15900742	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48707092					SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399487	NES15900742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41079625 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575897	regulatory region 575897	1541 bp distal
Rr575898	regulatory region 575898	985 bp distal