rs48703469 SNP Detail

Summary

• ID
  rs48703469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGATTTG TAACTGGGAA
  GAAAAGATTA GTTTCAACAT TTACACAGGA ATGAGTCTCT CCATGAAAGG CATGTATACA
  CATACCCCAC CACTCAAGCT GGAAAGGAGA GAAAGTTAAG TCTCATCAGA GATTCAATCA
  ATAATGCTGT ATTATTATAG CAAGCCTCTT TTCCTACTAG TGATGAAAAT GAATTCATTG
  Y
  GTTAAGAAAA TTTGTCTGTA ATACTTTCTA GAATTGGATT ACTGATTCAC TGTTTTGTGT
  TCGAATTTAT AAAAATTCTC TGAAAATCTA AGTTCATAAG GATTCATGGA AAATCTTGAA
  TAAGCTGTGC TAATCACATG ATCTATCTGT CTTACCCTGA TCTTATATCT ATAAAGTCTT
  AATACTCTGT GCCTTTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132961577	ENSMUSSNP1631108	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48703469					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103910 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1197 bp proximal
Rr626348	regulatory region 626348	1018 bp proximal
Rr626349	regulatory region 626349	1896 bp proximal