rs48701732 SNP Detail

Summary

• ID
  rs48701732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19620215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAATTT CATTTTTGTG
  TTGTACCCCA CCCCCACCAT ACAATGCTTT CTCTCTCTCA AAAACTAAAT TGATACACAA
  AATACAAGAA TATTTAAAAT AAACAAAAGC TCACTATGAT GAAAAATGGC AAACAAAACA
  AAATGAAACA AAAAGCGCAG TTGGCAGTGG CTCTGCCACA GGGTTCTGGA ACACGGGAAG
  R
  TATCAGTGGC TGCTGTCTCG TCTTTTTAGT ACCCTGCAGG AAGATTTCTT CTGAGGTCAG
  AGAGAACACA TGTTTCATGG CCCAATAAGG AAGTCAGGAA GAAATGGAGA TAGATTCACA
  ATAATAGCCA ACATTAAAAA CTGAGTTCAG AGGCAGAAAT GTGCTGGGTG TGGTAGTGCA
  TGCCTTTGAT CAGAGCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60377071	NES15885585	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A	A	A		A	A		A
ss320679169	CHEV_3_19466051	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48701732					SNP	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60377071	NES15885585	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19620215 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5b	DnaJ heat shock protein family (Hsp40) member C5 beta	Intron
Rr574004	regulatory region 574004	714 bp proximal