rs48701242 SNP Detail

Summary

• ID
  rs48701242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGTAA GTCCTGGTGC
  CAGGCCTTTC CCATAAATGC CTGGCCTGGT GGGCCATGCT GAGGCAGGCA TCATTTTAGC
  ACCAATAGGC TGGCTCACTT CCAGGCTCCC TTTGCTGGCA GACACATCTT TACTGTTGGA
  GGCTGGGTGT GAATCAGAGG GTTGATGAAG CCCTGGGAAG GTTGCATGAG CACTGGCAGA
  S
  CCTCAGCCAA CACAGGAGTG CTCAGTGAGC CTGACCTCCA CGGGCCCTGT GCTGTGTGAC
  GGCAGGTATG AAACTCTGTT CAGTTTCTAC CGTATCCTCA TCCCTGGGCT CCCTGTCAGG
  GGCACAGAGG AAGTCTATGT TGGTTTCTGT GGGAGTCATG GCTCGCAGCC CAGCATCTTA
  ATTGTCTTTA GTTTGAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398366	NES15902905	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48701242					SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398366	NES15902905	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332538 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1092 bp upstream
Rr575940	regulatory region 575940	1125 bp distal
Rr575941	regulatory region 575941	1206 bp distal
Rr575942	regulatory region 575942	608 bp distal
Rr575943	regulatory region 575943	within coordinates