rs48700594 SNP Detail

Summary

• ID
  rs48700594
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15259686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCACTCAT GAACAGATTG CTTTTGCATA ACTGCCTCGC
  CATCTGGTGG CAACATGTGG AAACGAGAAG GATCAGTCTG GAGATGTGAG CTGAGCAAGC
  W
  CTTTCCCTTG AAGAGGATAC TTGATGAGAT ATACCACTTT TCTAAAACAT TATACCATCA
  TAATTTTACA CCTTTATTGA CCAACCATGT TTACCAAATT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	PWD/PhJ
ss60372998	NES15871317	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	PWD/PhJ
rs48700594					SNP	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60372998	NES15871317	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15259686 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	349 bp distal
Rr573762	regulatory region 573762	within coordinates
Rr573763	regulatory region 573763	46 bp distal
Rr573764	regulatory region 573764	1494 bp proximal