rs48693398 SNP Detail

Summary

• ID
  rs48693398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130741469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATTTTTCT AGCATTGAAT GTTAGCATAG GATAACCCTG
  GGCTGCTTCT GCCCAGCCAT GGAATGAACT GAGGCAGGGG GTGTTCCTAG AACGTGCAAG
  K
  ATCCCTTTGT CTCAGTCTCC TGGGTTCCTG ACTGCCAAGA TTATAGCTAT AATTTAACGT
  ACCTGTGTTA CTAATATTTA GATTCTATAG TTATAGTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135902640	ENSMUSSNP4451899	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48693398					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130741469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	1447 bp distal
Gm65596	predicted gene, 65596	428 bp upstream
Rr585244	regulatory region 585244	439 bp distal
Rr585245	regulatory region 585245	131 bp distal
Tssr35670	transcription start site region 35670	481 bp upstream