rs48686877 SNP Detail

Summary

• ID
  rs48686877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATACTT TCAGTAAGTC
  TCATTGTTGG CCTGATCATC ACTCTGTCAG ATGTATAGAA AGTGTAAACT CATTTGCCAG
  GAATCCATGA AATCTGATTG TCTGTGTTTA TAGTTATGAC CCCTTAGTGG GAAATAGTGT
  AAATATGTTC TTTTCATAGA AGGTCCATCA GCCATGGTAA TGTTATACTG CATTCAAATC
  R
  TTATCTATGA GCTCTTGTGA ACAATAAGAG CTCCTGTTTC TATAAAATCA TTTGAGATAT
  TCTAAGCTCA TATTTTAGAA GATCAGTCAG AGAGGGCAGA GGTCCTCTGT TTAGGGCACT
  TTCTATTATC CAACAAAACA TCAAAAGTAA TTGGAATTGT ATAAATATTC AAAGGGAACC
  AGACTAGGGG CACTCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61092028	NES16588684	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48686877					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092028	NES16588684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			654 bp distal
Tssr32042	transcription start site region 32042			1541 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant