rs48683005 SNP Detail

Summary

• ID
  rs48683005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129085902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTGGTC TAAGAATAAG CTTGTGTGTT TAATTAGGTC
  ACTCTCCCGC CGACCTAGAA TCTCTCTCTT CTCAGGGCTT AGTGTGGGCT GCCAGAACCC
  S
  GAGGAGCCCT TGCAGGTCCT TTGAGGCTGT GACAGGCAGG CGCCACTGTG GTGCTGCCTG
  CCTGTAGCTT CCTGTGAATT TGAGAAACTT GTCAACTGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584270	ENSMUSSNP23184	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48683005					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129085902 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	929 bp downstream
Rr373845	regulatory region 373845	1960 bp upstream
Rr564888	regulatory region 564888	1131 bp distal
Rr564889	regulatory region 564889	386 bp distal
Rr564890	regulatory region 564890	within coordinates
Rr564891	regulatory region 564891	656 bp proximal
Rr564892	regulatory region 564892	671 bp proximal
Rr564893	regulatory region 564893	1527 bp proximal