rs48680139 SNP Detail

Summary

• ID
  rs48680139
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT TCGGTCTTTA CCCAGACACC
  A
  CAGGATCCCT CAGCGATCCT AAACG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148049670	ENSMUSSNP3242010	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321428610	CHEV_4_149562344	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48680139					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1701 bp distal
Rr605218	regulatory region 605218			1494 bp distal
Tssr40380	transcription start site region 40380			816 bp downstream
Tssr40381	transcription start site region 40381			794 bp downstream
Tssr40382	transcription start site region 40382			785 bp downstream
Tssr40383	transcription start site region 40383			767 bp downstream
Tssr40384	transcription start site region 40384			908 bp upstream
Tssr40385	transcription start site region 40385			963 bp upstream
Tssr44720	transcription start site region 44720			838 bp upstream
Tssr44721	transcription start site region 44721			916 bp downstream
Tssr44722	transcription start site region 44722			950 bp downstream
Tssr44723	transcription start site region 44723			1000 bp downstream