rs48677790 SNP Detail

Summary

• ID
  rs48677790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116016794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACTTTT TGCATTAAGC
  TTCCTCTGGC CCCAATTTGT GCCATGGGAA TTGACTTGGC AGAAGAAAGA ATTTCCCCTC
  AATCTGACTG ATTATGAGGG CACCTTGATG ACCTTAACGG AACCGTTTCT GTGTGAGACG
  AAATAGGAAC ATCAGGGGTC GGAGCCACGG CACCTGCTCA TCACTGCTTT TGATTGGCTC
  R
  CTGGCTTGTT GTTAGGCATT ATCAGCGGTG ACAGTAATAA CTGTGAATCT GGACTGGAGA
  GATGTCTCAG TTATTAAGAG TGCATGCTGC TTTTCCAGAG GTCAGAAGTT TGATTTTCAG
  AACGCATGAT AGACGACTCA TAACTCTTGT AACTCCAGCT CCAAGGGGCT ATGAAGCCCT
  CCATTGGCCT GTCCAGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437870	NES15932744	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48677790					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437870	NES15932744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116016794 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	958 bp distal
Rr583674	regulatory region 583674	within coordinates