rs48675440 SNP Detail

Summary

• ID
  rs48675440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127624662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATGCATA AGCTATCAGC
  CGGTGATTCC GTCCCTGGTC CTCTCCTGTA CAGGTGCAGA GGGGCTATTA TCAGAATGCC
  TATTAGCGGT AACAGAAAGA AAGAGAGAAA GAACACACCC ACCCCTGACG TAACAGAGAT
  GTCCATCAGT AAAGTAACAG TAAATGATGG TATAGTAGTA CAATACAGTG CTACACAGGA
  R
  GCGCATGATC AAGTATGAAA ATGAGAGTTT TGGACCAACT ATTCAAAATC ACTGAGAGAA
  ACAACCAAAT GTGTAGACTA ATATTTACTG TATTTAAAGT AGTTACTGAG GAACACGAAC
  ACAAATTCTT CCCTTGAATC TAGCCACCAT AGAAAGCTTG CTTCCAGTGG TAGGAACCAC
  AAGAGTCTGA GGGAGCTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135872342	ENSMUSSNP3027309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320957268	CHEV_3_127533931	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48675440					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127624662 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	452 bp distal
Rr584872	regulatory region 584872	within coordinates