rs48672768 SNP Detail

Summary

• ID
  rs48672768
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141875287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCCAAGC ACTTAGCGCA
  GGGATTACGC GGCCCGGCGC CTGGAGCGGT CCCAGCCACC TCCAGAGCCG TCCTCAGAGC
  ATCCCTGGCG CTGCAGCCGG ACAAACGTCC CTGGCTGGTC CAAAAGCCTT GCCACACGCC
  CCCTTCAGCT TCCAGAAACA AAAGCGCGAG GAGGCAGCGC GGAATGGTGC GAGCTGGGAC
  S
  GACTCCAAAT GGCAGAGCGC GGTGAACTTC AACTTCTCCG GGGCCAGCGA CACTTTGGAG
  AAGTTATGGA AACGTTGGTC ACACACCTCA TAAAAAAGGG GAGGGGAGTG CACATCAAAT
  TAGATCCACA GTCTCGGGTG AGGGGTTAGA AATCTTGAGG CATGGAGTGA GGCTTCCTAG
  GAAAATGAAA TTTTTCCTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61088436	NES16600657	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48672768					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088436	NES16600657	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141875287 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	mRNA-UTR
Cpgi13885	CpG island 13885	within coordinates
Rr586389	regulatory region 586389	324 bp distal
Rr586390	regulatory region 586390	within coordinates
Rr586391	regulatory region 586391	206 bp distal
Rr586392	regulatory region 586392	47 bp distal
Tssr35928	transcription start site region 35928	265 bp upstream
Tssr35929	transcription start site region 35929	197 bp upstream