rs48670483 SNP Detail

Summary

• ID
  rs48670483
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAAGAAT AAAGCAATAA AATAAGCAGT GACCATCAAC
  ACCAAATGTA ATGAGTTTCC ACCTAAGTGT GATACTAACA CAGCACATAC GTTATATAAT
  W
  AAGAGAAAAG ACCAGAAACT GATTTTGTCG CAATCCAGTT CCAGTGAGAG CCCCTGGAGT
  TCCAGTGCAC GTGTGGGTGG GACATGTGAC CTGAATACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136828280	ENSMUSSNP2098761	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323100060	CHEV_9_95309907	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48670483					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291541 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	1181 bp downstream
Gm35915	predicted gene, 35915	934 bp downstream
Gm37805	predicted gene, 37805	920 bp downstream
Rr684791	regulatory region 684791	1204 bp distal
Tssr90912	transcription start site region 90912	1709 bp upstream