rs48667036 SNP Detail

Summary

• ID
  rs48667036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19217652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCGCGGC AGGAAGGGCT
  TCTGCTTCTG TGTGCAGACA CGCGAACAGA ATAGTTTATC TTCAGCAAGT CTTCCAGGTC
  TGATAAAACA ACCTGTAACC CTTCATCCAC GTCTGTGCGT CTTTACCCAG AATCTTCGGA
  CGTTTTTTTG TAGTTTTTAC TATGAACGTC GACACTGTTT GGCCTCTCTG GATTTCGTTC
  R
  TTTCTTTTCA GTGCTGCTTT CTAGCAAAGC GAGGGATGCG AAGTGCTTTT GTTGGGTTGG
  CCTAAGTGAT TTGACATTGA AAAGAATTTT GTCTTTTCTC TTGTCAGAGA CTTGTGTTAA
  GAGAGTTCTC CAGTTCATCA TGAAGTTTTG TTAATGCTGT TTTCTATTTA TCAAAGTAAA
  GACATACTTG TTTTATCGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134665487	ENSMUSSNP1351608	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48667036					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19217652 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	mRNA-UTR
Gm65410	predicted gene, 65410	within coordinates
Rr397613	regulatory region 397613	184 bp downstream
Rr573944	regulatory region 573944	434 bp distal
Rr573945	regulatory region 573945	636 bp distal
Rr573946	regulatory region 573946	180 bp distal
Rr573947	regulatory region 573947	within coordinates
Rr573948	regulatory region 573948	1915 bp proximal
Tssr32687	transcription start site region 32687	403 bp upstream