rs48665774 SNP Detail

Summary

• ID
  rs48665774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125508334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTGGTAT CCTATAAAAG AAAGAGAGGG AGAGAGAGAA
  ACAATTGCAT TTAAAATGAA TGAATAAGAT AAGACTTCCT TAGGACCCAA CTGAGCCAAA
  R
  CCTTAGACAT AACTGTTTTT CTATGGCATA AGTTCTCAGC CCGTTAATGT TGCAGCCCTT
  TAATACAGTT CCTCATGTTC TGGTGACCCC TAACCGTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147484303	ENSMUSSNP3537850	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48665774					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125508334 () rs orientation: forward

Symbol	Name	Function Class
D2Mit105	DNA segment, Chr 2, Massachusetts Institute of Technology 105	594 bp distal
Rr397269	regulatory region 397269	908 bp upstream
Rr564256	regulatory region 564256	619 bp distal
Rr564257	regulatory region 564257	within coordinates
Rr564258	regulatory region 564258	744 bp proximal
Rr564259	regulatory region 564259	802 bp proximal
Rr564260	regulatory region 564260	1413 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	Intron