rs48660587 SNP Detail

Summary

• ID
  rs48660587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33103314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAGTCC ATAGAGTCCA
  AGGAGACACG TTCTACCTGC CAAGCAGCAC TAAGTGTACA CTCACCAATT GTAAGCAAGC
  CAAGGCCTCG GGGGTGGGTA ATCAAGCAAC GTCATGGCAG TGATTTAACA CTTGGAAAGT
  CTTTTGCATT AGAGAGAAGA AATGACAGAA AGAATAGTAA CTCCATCATA TCTACACAAT
  R
  TTTTCTTAAA AGCTTGAAGC AAGGTAATTA TTATCACACA TGTATGAGTT AAAAGGGGCA
  GCGTTTTCTA GTCTGAAAAG ATATATATGG TTTACTAAGT CAACCAGGAC AAGGCAGGCT
  AAGTCCAGTT GGTATCAAGG CTTTCCAAAT ACAGGGCTGT GTTCCATCCA GAGCACGAAA
  CACAAGGATC CCCCAGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60875850	NES15977683	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48660587					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60875850	NES15977683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33103314 () rs orientation: forward

Symbol	Name	Function Class
Rr628172	regulatory region 628172	133 bp proximal
Rr628173	regulatory region 628173	1011 bp proximal