rs48658301 SNP Detail

Summary

• ID
  rs48658301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87208221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCCTCA TGTAGGGGTG
  ACCCGAAACC ATAAAATTAT TTTCTAAAAC AAAACATAAG GGAAGAGAAA CTAAGATGTT
  AGTGGAGGAG AAATGGGACC AGGGGACTTT TCTAAGCCTA AAATCATCTG AAAGATGGAA
  ACTGCCTCTC CCGCCCAATA CTTGTGGTGA AGGGTGGGTC CTTCCAGTTT ACCTTGCTGT
  R
  GTTAGTGACC TCAGACTCGG AGAGTCATGA TGGGCTTCTG TTTCTTCAGC AGCTGGACAG
  TGGCATAACT AAGAGGGTGG TGCCAAAAGA TTAAACCGCT GAAGATTTTT CTGAGGGGCT
  CAGCTGGTGA GACACTTTGT CTCAATGTTT ATAAGGCTGT AATGGTTAGC ACTCTCCGGA
  CCAGAAAGGA ATTCCATTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60764008	NES16394030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48658301					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764008	NES16394030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87208221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efhd1	EF hand domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr414772	regulatory region 414772			1330 bp proximal
Rr414773	regulatory region 414773			1511 bp proximal
Rr414774	regulatory region 414774			1679 bp proximal
Tssr7837	transcription start site region 7837			1258 bp upstream