rs48658003 SNP Detail

Summary

• ID
  rs48658003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141789496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAAGCA CTGGCGATGC
  CAGCGAAGAC ACTTATCCTG AAAAACCTGC TCCATCTAAG TTCCCAACAA TCGCTGCCAC
  TGGCTGGCAG AGGTAGTGAA CATCCCTGCA CTTAACTCCG AGCCCAAATC ACGCGCGCAC
  GAACTGCTAG CCTGCTCCTG ACCCCTTAGC TGTTCAGCTC TGCACACAGT CCCTCCTCAG
  R
  GTTGCGGGGC AGGGTGGTGC CCCCCGTGGT GGAGCTAAAC ACCCCAACAA GCCTGGCCAC
  AGTGGCTGTG GTGCAGTGAC CGAATGGGGG CAGCCATCTT TGGAGTTTGT GTTGTTAAAA
  CTGATGCCAC ATGTGGTTGA CACATGCCAG CATTTCGGAG GTGAAAGCAG TAGTTCAAGG
  GCAGCTTTGA CTGCTATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147747822	ENSMUSSNP5783209	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48658003					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141789496 () rs orientation: forward

Symbol	Name	Function Class
Rr603976	regulatory region 603976	745 bp distal
Rr603977	regulatory region 603977	588 bp proximal
Tmem51	transmembrane protein 51	Intron