rs48657875 SNP Detail

Summary

• ID
  rs48657875
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143886576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGAGCC ACAGGCATTG GTTTTTGTGG GAACTCTTGA
  GTCCTGAAGG ACCAGTGGCA GGGCTGGGAC AGCATCTGCT AAGGTTGCCC TGGAAAGACT
  A
  GCTCTGGATC TTCCCAGCCC TCAGCATATA GCTTGCCTGT GTCTTTTACT GAGAAGACAC
  GCTGGTCTCC ACCACTCTGA TCCTCCATTT CCCCAAATC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147779393	ENSMUSSNP96949	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48657875					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143886576 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	173 bp proximal
Rr566365	regulatory region 566365	1641 bp proximal
Rr566366	regulatory region 566366	1749 bp proximal