rs48657778 SNP Detail

Summary

• ID
  rs48657778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT AGGGACGCTC TCTCGTTCTC
  R
  TCTTTGGCCT CACTGAATTC AAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52684835	NES15534680	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A		A	A	A	A
ss145068601	ENSMUSSNP2755989	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48657778					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684835	NES15534680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568625 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr123698	transcription start site region 123698	1875 bp upstream
Tssr123699	transcription start site region 123699	1791 bp upstream
Tssr123700	transcription start site region 123700	1744 bp upstream
Tssr123701	transcription start site region 123701	1719 bp upstream
Tssr123702	transcription start site region 123702	1700 bp upstream
Tssr123703	transcription start site region 123703	1648 bp upstream
Tssr123704	transcription start site region 123704	1592 bp upstream
Tssr123705	transcription start site region 123705	1291 bp upstream
Tssr123706	transcription start site region 123706	1064 bp upstream
Tssr123707	transcription start site region 123707	872 bp upstream
Tssr123708	transcription start site region 123708	674 bp upstream
Tssr123709	transcription start site region 123709	502 bp upstream
Tssr123710	transcription start site region 123710	691 bp downstream
Tssr123711	transcription start site region 123711	897 bp downstream
Tssr123712	transcription start site region 123712	1127 bp downstream
Tssr123713	transcription start site region 123713	1342 bp downstream
Tssr123714	transcription start site region 123714	1382 bp downstream
Tssr123715	transcription start site region 123715	1415 bp downstream
Tssr123716	transcription start site region 123716	1479 bp downstream
Tssr123717	transcription start site region 123717	1884 bp downstream
Tssr123718	transcription start site region 123718	1978 bp downstream