rs48655254 SNP Detail

Summary

• ID
  rs48655254
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGCGACG AAGAATCTCG CTTGAGGCGC AGACGAAGAG
  GGGTGAGCAT CTTGCTGATC TGAGTCCCCC GGAGGTCAGG AATTCTAGGA AAGGACAGTC
  M
  AAGGCCAGTG CCCATCCTTG CACCAATCTA ATCCTCATGG TTTGGGGCTG AGAAGCTGTG
  CAAAGCAAGG GCGGAGGGAC GCCTTCTGAG GCTTCCAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147552357	ENSMUSSNP1421211	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48655254					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967474 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	484 bp upstream
Cpgi12234	CpG island 12234	1598 bp distal
Cpgi12235	CpG island 12235	within coordinates
Gm74510	predicted gene, 74510	663 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr397296	regulatory region 397296	1779 bp upstream
Rr564648	regulatory region 564648	1007 bp distal
Rr564651	regulatory region 564651	within coordinates
Rr564652	regulatory region 564652	599 bp proximal
Rr564653	regulatory region 564653	674 bp proximal
Tssr20042	transcription start site region 20042	476 bp upstream
Tssr26150	transcription start site region 26150	1846 bp downstream