rs48654860 SNP Detail

Summary

• ID
  rs48654860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149955278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CTCCAGATGA CCCCATGCCC
  Y
  CTTGAAGCAC GAGTCATCTA TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321427060	CHEV_4_149244930	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48654860					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149955278 () rs orientation: forward

Symbol	Name	Function Class
Rr377409	regulatory region 377409	1728 bp downstream
Rr605087	regulatory region 605087	1716 bp distal
Rr605088	regulatory region 605088	484 bp distal
Rr605089	regulatory region 605089	188 bp distal
Rr605090	regulatory region 605090	161 bp proximal