rs48648954 SNP Detail

Summary

• ID
  rs48648954
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148467039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GTGGGGTCAG CACCTGAGCC
  T
  ACGTCCAGCC ATCTGGCTCT GAGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148004877	ENSMUSSNP7039437	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321419875	CHEV_4_147756691	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48648954					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148467039 () rs orientation: forward

Symbol	Name	Function Class
Rr604668	regulatory region 604668	1802 bp distal
Rr604669	regulatory region 604669	1316 bp proximal