rs48645574 SNP Detail

Summary

• ID
  rs48645574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTAATG TGTTTTAGGT
  TTTCATTGTC TTCTATCATA ATTCTAAATA TTTTACATAT ACTATTATTT TGTTTGTTAG
  GGTTCTTATT GACTTCATTA GCTTCATATA ATCATCATAT CAAATTCATA CACATATACA
  CATATATACA TACTCATGAA CAGAAAAACT CATCACGTGT CAATTACTAA TTTGTGAGTA
  Y
  ATAAAAACTT TCTTTGACAA AATATTTATC CTCTTAATTA TATACCTTCT TGCCATTTTT
  ATGTTTTTGG AAACATTCTC CTCCTCTGTG TGCAGAAAAC TCCAACCAGC AGCATAAAAA
  TGTAAAATAA GACTTAAAAT ATATAGTCAC TTTTACTTTG TTTTCACATT ACTCTGCACT
  ACAATCCCAG ATATCACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52289280	NES15305183	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48645574					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289280	NES15305183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356056 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	652 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	701 bp upstream
Rr431273	regulatory region 431273	513 bp proximal
Tssr93232	transcription start site region 93232	276 bp upstream
Tssr93233	transcription start site region 93233	853 bp upstream
Tssr93234	transcription start site region 93234	879 bp upstream
Tssr93235	transcription start site region 93235	1172 bp upstream
Tssr93236	transcription start site region 93236	1658 bp upstream
Tssr93237	transcription start site region 93237	1697 bp upstream
Tssr93238	transcription start site region 93238	1721 bp upstream
Tssr93239	transcription start site region 93239	1746 bp upstream
Tssr93240	transcription start site region 93240	1763 bp upstream
Tssr93241	transcription start site region 93241	1785 bp upstream
Tssr93242	transcription start site region 93242	1825 bp upstream
Tssr97553	transcription start site region 97553	474 bp downstream