rs48643193 SNP Detail

Summary

• ID
  rs48643193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144149834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCGCACCA AAAGAGGGTG TCAGATCTCA TTATGGGTGG
  TTGTGAGCCA CCATGTGGTT TCTGGGATTT GAACTCAGGA CCTTCAGAAG AGCAGTCAGC
  R
  CTCTTACCCG CTGAGCCATC TCTCCAGCCC CAACTTCCTC CACTTTAATG GTCCACTTTC
  TACTTAAAAC AAAAACAAAC AAACAAACAA ACAAACAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147790764	ENSMUSSNP3949063	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48643193					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144149834 () rs orientation: forward

Symbol	Name	Function Class
Ovol2	ovo like zinc finger 2	Intron
Rr566440	regulatory region 566440	1816 bp distal
Rr566441	regulatory region 566441	324 bp proximal