rs48642455 SNP Detail

Summary

• ID
  rs48642455
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAACCCT GGCACAGTCC
  AAGGGAAAGA ACAGAAAGCC TGGCAAGGCT AAAAGCAGCT CCAGGGAGCT CTGGTCACCT
  GCTCGATGGA AAAGGCAGAG ACAGGAGGAC GGTGGACTAC AGCAGAGGCG GAGGACAAGA
  GGACTTATGA CAGCAGCCGG CCAGCGGCCC CGCCTCTGGG CTTGGTGGAC ACCGCCCCCA
  M
  GAGCACACCC ATGCTACCAG GCTGGACAGT CCCAGCAGCA GTTTCTGCCC ACTGCACCCA
  GCAACGCCAC AAACAAGGCA AAGGCTGGCA AAACAAGGAA GCTTTCAGGA GGTGGCAAAC
  AGCCAACTCA AACCGGATAA TTCCAGTTCA GGCTGGTTCA AGATACAAAC ACAGTTCCTA
  GCTTCTCAAA CAAAACTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147739687	ENSMUSSNP3186681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321387738	CHEV_4_141062429	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48642455					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1717 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			596 bp proximal
Rr603783	regulatory region 603783			869 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant