rs48641206 SNP Detail

Summary

• ID
  rs48641206
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAAACAAAA CAAATGTAGC TCAAGCTGAA AGTGAAAAGC
  CCTTGGATAG ATTGGTATTT TCTTTTCTGC AGGGCATCCT GTCAACTGTC TTCCCCCGCA
  M
  CCCACTCCTC AATAAGGTCC GGGTTTTGCT TGTAGGAAAA TGTTGTTATC TACCACCCCA
  CGGAACCCGC ATAAGTATTG TTGCTTTATT TTATTTTTAT C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146960085	ENSMUSSNP1285759	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48641206					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	317 bp proximal
Cpgi1374	CpG island 1374	1105 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	527 bp upstream
Raet1e	retinoic acid early transcript 1E	460 bp upstream
Rr384270	regulatory region 384270	1251 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	515 bp proximal
Tssr92677	transcription start site region 92677	313 bp upstream
Tssr92678	transcription start site region 92678	387 bp upstream
Tssr92679	transcription start site region 92679	439 bp upstream
Tssr92680	transcription start site region 92680	484 bp upstream