rs48640232 SNP Detail

Summary

• ID
  rs48640232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156908642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC CACTGTTAAC ACAGTGCTTT
  Y
  CAGCCTAGCC CCTGTGGCTG GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145814238	ENSMUSSNP6520498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48640232					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156908642 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	937 bp distal
Rr421336	regulatory region 421336	1519 bp distal
Rr421337	regulatory region 421337	320 bp proximal
Rr421338	regulatory region 421338	409 bp proximal
Rr421339	regulatory region 421339	531 bp proximal
Rr421340	regulatory region 421340	570 bp proximal
Rr421341	regulatory region 421341	1025 bp proximal
Rr421342	regulatory region 421342	1111 bp proximal
Rr421343	regulatory region 421343	1332 bp proximal
Rr421344	regulatory region 421344	1782 bp proximal