rs48640195 SNP Detail

Summary

• ID
  rs48640195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129469527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACC CGCCTGGGGG GCACGGTGCT
  R
  ACAAGCAGTG CATGAATTCT AAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147442851	ENSMUSSNP4990299	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48640195					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129469527 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1081 bp downstream
Gm68905	predicted gene, 68905	341 bp upstream
Rr367705	regulatory region 367705	249 bp downstream
Rr600277	regulatory region 600277	1784 bp distal
Rr600278	regulatory region 600278	352 bp distal
Rr600279	regulatory region 600279	within coordinates
Rr600280	regulatory region 600280	204 bp proximal
Rr600281	regulatory region 600281	1327 bp proximal
Rr600282	regulatory region 600282	1564 bp proximal
Tssr39177	transcription start site region 39177	1966 bp downstream
Tssr39178	transcription start site region 39178	83 bp downstream
Tssr43528	transcription start site region 43528	533 bp upstream
Tssr43529	transcription start site region 43529	437 bp upstream
Tssr43530	transcription start site region 43530	382 bp upstream
Tssr43531	transcription start site region 43531	333 bp upstream