rs48640154 SNP Detail

Summary

• ID
  rs48640154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153395275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGAGC ATGAGTAAGT
  AGCAAGCTGA ATCCGCAAGA CCCCATCTCT CCCAGGACAG TGGTACTTAT GGTGCTTCTG
  CATCCGCTGT TCTGTGCTCA GGCTCACAGT GATGCACAAT GAAGCGGCAC ACAGGGCTCC
  ATGCTGACGT TCATGTGAGT GCTGGTTTCT GCCTCCATGC AGAGAAGGCC AGGTCTTCTC
  R
  TTCACAGACA GCAATAACTC CCCAGGGAGT ATCAACAGCT ACGTTTCACA GTGTCCTTCA
  TACTAAGGTG CATAAGACAG AATGAATAAT CTCTCTCTTT TCTGAGGACA CCATTCCAGG
  GAGCAGAGGG ACACGAAGCA TATAAAAGAG AAATGGAGAA AATGAAAAGG AATTAGATTA
  ACCTCCTAGA AGGCAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111008	ENSMUSSNP6179240	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48640154					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153395275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			1172 bp proximal
Rr587733	regulatory region 587733			1705 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant