rs48636068 SNP Detail

Summary

• ID
  rs48636068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCTTT CCTTCCCTCT
  AAACCTTCCC ATATATTTCT CTTTGCTCTC TTTCAAGTCC ATGGCCTTTT TTTTCCATTA
  ATTTTTAACA TGTATATGTG TTCCAAAATG CAAAAATACA ACCTGCTCAG TCTATGTTAC
  TTGTATGTAT GTTTTTAGGG CTGACCATTT GATCTTAGAT AACCAGCTAG TGTGTTCTTC
  M
  CAGGGGAAGA CTATTTATTT ACCTGTAGTT TGTTTTGTAG GGTGGAGGTC TGGTGATCCC
  TGTCGGCTGT TGGAGAGGCC TTAGCATCAA TCATTAGGTC CATTTGGGCC ATTGCTTTAT
  TATTTTCAAA GCCACAGCAC CACCTACTGG CATATTGAAG AACAGTTCTG TATGTTAGAT
  GGAGGAGAGA GAGAGAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958547	CHEV_3_127651884	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48636068					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss135875936	ENSMUSSNP5416636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742615 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	55 bp upstream
Rr584909	regulatory region 584909	346 bp distal
Rr584910	regulatory region 584910	within coordinates
Rr584911	regulatory region 584911	134 bp proximal
Tssr31619	transcription start site region 31619	1337 bp upstream