rs48634964 SNP Detail

Summary

• ID
  rs48634964
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127152407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAGCCTA ATCCCCAGGA AGAGAGAGAC TGGGCCTGGC
  ATGGGCTTTG GAAACCTCAA GGCCCACCCC AAGTGACACA CTTCCTCCAA CAAGGCCACA
  M
  CTAATCCTAT CAAAGTTGCT TCTAATCCTA TCAGAGTTTA CTCCCTGGTA ACTAAGCATT
  CACGTATGAG CCTATGGGGA CCATTTCTAT CACACCACC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147525540	ENSMUSSNP5962189	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48634964					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127152407 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	1395 bp downstream
Rr397284	regulatory region 397284	247 bp upstream
Rr564490	regulatory region 564490	1407 bp distal
Rr564491	regulatory region 564491	1619 bp distal
Rr564492	regulatory region 564492	within coordinates
Rr564493	regulatory region 564493	889 bp proximal