rs48634811 SNP Detail

Summary

• ID
  rs48634811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACCAT GTGAGAAAGA
  TGTTTGATAA ACAAAGCGCC TCAGGGAAAA TTGCAAAACA AATTTTCTAA CACTGGTTTT
  TGGTACAGTA TGAATCTCAG AATCCAATTA ATTAAAAAAC ATACTAAAGT CTCTAAATTG
  AGCTACTCTT AAGTTCCCAT TTCTACATGC ACCAAAGCGT AGGGATCTAT ATTCCAAATT
  Y
  TTGGTTCCTC TTTGGCATTC CTAGGATTAT TTACGGTCAC TGTGGTGTCC TCTGTGTTCT
  AGCAGAGAGC CACACTGGAG AAATCGCAAC TGGCAGTCAA TGTTTAACTG GTACTCCACC
  TGGACATTCC ATTCTGTTTC AAGCTTTGTT CTTCAATAAT TGATTAGAGG AGACACGAAG
  GAGGTAGCTT TGTCTTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135371753	ENSMUSSNP2790720	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48634811					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287294 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1559 bp distal
Rr578509	regulatory region 578509	268 bp distal
Rr578510	regulatory region 578510	within coordinates
Rr578511	regulatory region 578511	1451 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron