rs48633881 SNP Detail

Summary

• ID
  rs48633881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58994755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTTTG TGGAAAAGAG
  GTAAAATAAG CACACTGGAT ATACTTGATT ATGACTGTCT GGAGCCCGAC ACTGGATCTT
  TGGGACAAGC AAGGGGAGGC TCTCCTTTAA CTAACTGGAG GCCTAGTGAA AAGCTTTGGG
  CAGTGGTTCT CAACCTTCTT CGTGCTGCAG CCCTCTAATA CAGTTCCTCA TGGGTTGAGA
  Y
  CTACAGGTTG AGAACCATTG GCCTTGGGGA CAGCAAGTGT CGGAGAGATT CAAGTGGTTT
  GAATGTTGGA AACAGGAAGA TGAGAAGGCA GAGGAGACTT CCCTGATAGC AGAAAGCCAG
  GTTGGGGAGG GGGGTGGCAG ATGACAATCA TCTTGGATCA TTGGGAAGTG CACATTTGTT
  CCAGATTTGC TGCCTCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415401	NES15910900	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48633881					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415401	NES15910900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58994755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577311	regulatory region 577311			666 bp proximal
Rr577312	regulatory region 577312			759 bp proximal
Rr577313	regulatory region 577313			817 bp proximal