rs48631394 SNP Detail

Summary

• ID
  rs48631394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38829341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCCACCC AAAGCCCTAG TAATGGATGC GGTCATCCTA
  ACCCGCACAG AGGCAGGACC CACATCCACT GGCTCTTGTT AACAGCATCA CTCCCTGCTC
  Y
  TCTGAGTCCA GGACAGAGCT TAAAGACAGG ATTAAAACAT GGTTTAGCAA TTAATAGCTG
  GGTGCACTGG CAGCACTATT CATCCTCCTT GATACATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134843750	ENSMUSSNP6159247	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320722868	CHEV_3_38674114	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48631394					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38829341 () rs orientation: forward

Symbol	Name	Function Class
Rr575702	regulatory region 575702	1654 bp proximal