rs48631298 SNP Detail

Summary

• ID
  rs48631298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151767455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAAAGCT GAGAGAAGGG
  ACTCAGAGGT ACTGAGCCCG GCAGCCGTTC TCTCAACAGG GGACAGGGGA AGGGGTGAAG
  GAGACAATGA ACAAAGTGAT ACATCCTGAC CTCATGGAGT CCAGGGGTCA GCAGTCACCA
  AGAGGGAAGT GCTGATGAGG AAGGACTTGT AATCAGCTTT TTACAGCACT GTCACTCCAA
  R
  GCAATGAGAG ACACAACGAA CAGACTCAAT GTGCGCATGC GCCAACCAAG AGCCTGTGAG
  TTGGTCTGCA TCTCCTAAAT GCACCACTTG TGACCATGTT TTAGATAATC TGAGAGGAAG
  AGGGTCTGCC GGCTCTCAAG TCCCTTCTGC CTTGTAAGAA AAAAATAACG GTCGTTTCTC
  AAAAGGGCCA GAGGGTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148075619	ENSMUSSNP2091889	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48631298					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151767455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Gm38442	predicted gene, 38442			within coordinates
Rr605620	regulatory region 605620			696 bp distal
Rr605621	regulatory region 605621			292 bp proximal