rs48630817 SNP Detail

Summary

• ID
  rs48630817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157936700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGACCT GGAAGACCAT
  AGCATGTAGA GGAAGAGAGA GCAAGTCAGG TGGGCTCAGG GGCTATCCAT CTGCATGGGC
  CACGGAAGGC AGATAGATAG CTCTTACTTG GAGACTAAAA CTGGGCCCAA GAGCTAGACG
  TTCTAGGAGG AAGAGCTGTT GAGACGGCTG GCTCTTCTCA GCCAGGAGCT CTAACAGAGC
  Y
  CATTCTTTAC AAAGAGAAGT AACTACAACA CACCAGATCC CCTCCAAGAT CCAAAATTAA
  CATTTTTGTT GGTCCTAAGA TGGGGTTAAT TGATAATCTT GGTAGGGACA AGACCACTTC
  TATTTTAAAG CTGGACGCTC ACCAAGAACT TGATAAATGG TGTCCCAGAT TTCCCAGGCT
  GCTTTCTGAT GAACTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148109381	ENSMUSSNP174054	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48630817					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157936700 () rs orientation: forward

Symbol	Name	Function Class
Rr568641	regulatory region 568641	1014 bp distal
Rr568642	regulatory region 568642	within coordinates
Rr568643	regulatory region 568643	515 bp proximal