rs48621526 SNP Detail

Summary

• ID
  rs48621526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163628748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATAAACCA AAACTCTCAA CACTTGGTTG GGTCCAGCAC
  GTGGGAGGTA GAGGTTCCAA ATCCCAGGCC AGAAACAAAA CAAAACAAAA CAAAAATCCC
  R
  AATGGGCATG ATGGGGCCAG GGGGATCAGG AGTTGGAGGT CACCCTTAGC TACGTTAAGT
  CTGGGGCTAT CCTAGGGTAC ATGAGCCCTC TCAGTAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148212617	ENSMUSSNP710302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320604018	CHEV_2_163612564	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48621526					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163628748 () rs orientation: forward

Symbol	Name	Function Class
Gm75515	predicted gene, 75515	within coordinates
Rr569489	regulatory region 569489	845 bp proximal
Rr569490	regulatory region 569490	1742 bp proximal
Rr569491	regulatory region 569491	1848 bp proximal