rs48620844 SNP Detail

Summary

• ID
  rs48620844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108488991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTGAA CAAGTTTTCA
  AGCTAAACAT CAATCGAAAC CACCGAGGCT TTAGGAGAGT GATCCAGAGC AAAGGAATCA
  AATTTGAGAT CTTCCACAAA GGGTAAGGGT TCCCTCCCAC TGGCAGATCT GTGCCTGTTC
  TCTGTGCCAC TGTTTGCACT AAGCTTGCAC TAAACTCAGT CAGTTTACTC CTGCCCCTGC
  Y
  CCCTCTGCGC AGTCTAATCC TCTGCTTCTT GCCTTCCCAG ATCCTTTTTT AGAAGTGACA
  AGCTGGTTGG CACAGCACAC TTGAAATTGG AAAGGCTGGA GAAGGAGTGT GAGATCAGAG
  AGATCATGGA GGTAGGGCCC AAGATGAACT CATGTTCTTG TTACTGTTGA GGGGTCTATG
  ACATCGTAAG TTGTTAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147188673	ENSMUSSNP6861535	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48620844					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108488991 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr597206	regulatory region 597206			717 bp proximal
Tssr38309	transcription start site region 38309			1291 bp upstream
Tssr38310	transcription start site region 38310			1302 bp upstream
Tssr38311	transcription start site region 38311			1326 bp upstream