rs48615600 SNP Detail

Summary

• ID
  rs48615600
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84216513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGGAAGG GCAAGTCACA ATGACAAAAA ATAGATTGAC
  TACATCAAAA TTATAGATGC TTGTGTACAA ATGGCGCCAT TGTGGAAGAA AGGTTCTGAG
  A
  GCATCTCAGT GGTAGAAGAG TGAGCCAGAA TGAGCAAGAT CCTAGATTCA ATGTACACAC
  ACACTCATAC ACTCTCACAC ACATACACAC TCATATACT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146830273	ENSMUSSNP6290942	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48615600					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84216513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			1397 bp upstream
Rr560244	regulatory region 560244			576 bp distal
Rr560245	regulatory region 560245			907 bp proximal
Rr560246	regulatory region 560246			1408 bp proximal
Rr560247	regulatory region 560247			1916 bp proximal
Tssr24971	transcription start site region 24971			1020 bp downstream