rs48614222 SNP Detail

Summary

• ID
  rs48614222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116837094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCAACT ATAATGGAGC
  CAAAATAAAC TCTTCTTCCT TTAAGTTGCT TCAATCAGAT ATTTTGTCAT AATGAGAGAT
  AAGTTCCCAA TACAGGAATA TAAATGAGTG TTTCCTCAAG TAATTTAAGA GATTTTCTTG
  ACAGCTTATT CCCCAAGGCC AGGGTTTAAG TTCTGCTGCT ACTTCAGACA ATATGGAGCT
  R
  CTCCTTACAC CTCACAGGAG TCCACAACCT TCACCACCAG GCTCCCGCAG ACACTTGCAG
  AGCCAGTGAG GCTGGTGCCC TCAGACAGCG TTAGTGTTCT CTTTCTCTGA TTGGATGCCA
  TTGATAGTAA TGTCATGACA CACAGATAAC ATGTATCGCA CGGAACTCTT ACCGATACCA
  TCGTAAATAT AATCTTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60435222	NES15935650	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48614222					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435222	NES15935650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116837094 () rs orientation: forward

Symbol	Name	Function Class
Rr583826	regulatory region 583826	853 bp proximal