rs48612399 SNP Detail

Summary

• ID
  rs48612399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137307596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG ATTAGTATGT GACCCAGTTC
  K
  GACCTATAAG ATTTAAAAAG AGGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147612412	ENSMUSSNP3866586	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss321365361	CHEV_4_137136200	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48612399					SNP	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137307596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15131	CpG island 15131	1556 bp distal
Gm70277	predicted gene, 70277	within coordinates
Gm70281	predicted gene, 70281	943 bp downstream
Ldlrad2	low density lipoprotein receptor class A domain containing 2	Intron
Rr602650	regulatory region 602650	1862 bp distal
Rr602652	regulatory region 602652	129 bp distal
Rr602653	regulatory region 602653	1681 bp proximal
Rr602654	regulatory region 602654	1809 bp proximal