rs48612371 SNP Detail

Summary

• ID
  rs48612371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGGAAG GACATAATAT
  ACAGGCACAA GCTACCGAGC CTTTTGTTGG GCCCTATTTG GCCTTGGTTT GGGCTCAATT
  TTTGAGACCC GTCATTCTCC TCCACTTGAG AATGACTCAG CACGACCTAC CAACCTGATT
  GAGACTGCCT CTGCCTAGCT ACTGCTGATG TAGGCCCCGT GAGATAACCC CACACCCCTC
  R
  TCATTTCACT CCATCACATA TGTCATCTCA CCCCATATCC CTACCCCCAC CTCCTTGCCT
  TCTCTATATA AGCAAGTATC TAGTTTAATA AAGTGAGTTT CTGCTTTGAC AACACTCCTG
  GCCCAGGTGT GTTTGTTTGG GGCCATCAAC ACTCACCATC CCACTCAGCC TCAGAGAGGC
  TGAAGTGAGC TCTCTCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671186	ENSMUSSNP5548733	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48612371					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13006	CpG island 13006	1660 bp proximal
Gm64742	predicted gene, 64742	1958 bp upstream
Rr574033	regulatory region 574033	1468 bp proximal
Rr574034	regulatory region 574034	1899 bp proximal
Rr574035	regulatory region 574035	1969 bp proximal
Tssr28531	transcription start site region 28531	1957 bp upstream